PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G036500.1
Common NameB456_001G036500, LOC105772639
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 187aa    MW: 21072.8 Da    PI: 9.1277
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G036500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-18755254
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                        +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + 
  Gorai.001G036500.1  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 55
                        69******9.**********8.....334**********************8775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.52E-34666No hitNo description
PROSITE profilePS5103221.14764IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-34764IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-21766IPR016177DNA-binding domain
SMARTSM003807.3E-41770IPR001471AP2/ERF domain
PfamPF008472.1E-11756IPR001471AP2/ERF domain
PRINTSPR003673.0E-11819IPR001471AP2/ERF domain
PRINTSPR003673.0E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MARPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGPRAR  60
TNFPYNPNAL QSSSSKLLSA TLTAKLHKCY MASLQITKQK SVQKPQNKAL TPLVISNNND  120
DDGIAARDSG TGVRLVEKRS LAETEAKSAQ VETTQQFKPL EEDHIEQMIE ELLHYGSIEL  180
CNVYSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A1e-17869668ATERF1
2gcc_A1e-17869668ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00526DAPTransfer from AT5G25190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9692050.0KC969205.1 Gossypium barbadense pathogenesis-related transcriptional factor ERF mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012449523.11e-139PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW52e-86ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLS5YYK71e-139S5YYK7_G
TrEMBLA0A0D2N5631e-139A0A0D2N563_G
STRINGBra020490.1-P1e-86(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.14e-63ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]